Hamming Error Correction with Kotlin – part 2

In this article, we continue where we left off and focus solely on error detection for Hamming codes.

https://touk.pl/blog/2017/10/17/hamming-error-correction-with-kotlin-part-1/

Error Correction

Utilizing Hamming(7,4) encoding allows us to detect double-bit errors and even correct single-bit ones!

During the encoding, we only add parity bits, so the happy path decoding scenario involves stripping the message from the parity bits which reside at known indexes (1,2,4…n, 2n):

fun stripHammingMetadata(input: EncodedString): BinaryString {
    return input.value.asSequence()
      .filterIndexed { i, _ -> (i + 1).isPowerOfTwo().not() }
      .joinToString("")
      .let(::BinaryString)
}

This is rarely the case because since we made effort to calculate parity bits, we want to leverage them first.

The codeword validation is quite intuitive if you already understand the encoding process. We simply need to recalculate all parity bits and do the parity check (check if those values match what’s in the message):

private fun indexesOfInvalidParityBits(input: EncodedString): List<Int> {
    fun toValidationResult(it: Int, input: EncodedString): Pair<Int, Boolean> =
      helper.parityIndicesSequence(it - 1, input.length)
        .map { v -> input[v].toBinaryInt() }
        .fold(input[it - 1].toBinaryInt()) { a, b -> a xor b }
        .let { r -> it to (r == 0) }

    return generateSequence(1) { it * 2 }
      .takeWhile { it < input.length }
      .map { toValidationResult(it, input) }
      .filter { !it.second }
      .map { it.first }
      .toList()
}

If they all match, then the codeword does not contain any errors:

override fun isValid(codeWord: EncodedString) =
  indexesOfInvalidParityBits(input).isEmpty()

Now, when we already know if the message was transmitted incorrectly, we can request the sender to retransmit the message… or try to correct it ourselves.

Finding the distorted bit is as easy as summing the indexes of invalid parity bits – the result is the index of the faulty one. In order to correct the message, we can simply flip the bit:

override fun decode(codeWord: EncodedString): BinaryString =
  indexesOfInvalidParityBits(codeWord).let { result ->
      when (result.isEmpty()) {
          true -> codeWord
          false -> codeWord.withBitFlippedAt(result.sum() - 1)
      }.let { extractor.stripHammingMetadata(it) }
  }

We flip the bit using an extension:

private fun EncodedString.withBitFlippedAt(index: Int) = this[index].toString().toInt()
  .let { this.value.replaceRange(index, index + 1, ((it + 1) % 2).toString()) }
  .let(::EncodedString)

We can see that it works by writing a home-made property test:

@Test
fun shouldEncodeAndDecodeWithSingleBitErrors() = repeat(10000) {
    randomMessage().let {
        assertThat(it).isEqualTo(decoder.decode(encoder.encode(it)
          .withBitFlippedAt(rand.nextInt(it.length))))
    }
}

Unfortunately, the Hamming (7,4) does not distinguish between codewords containing one or two distorted bits. If you try to correct the two-bit error, the result will be incorrect.

Disappointing, right? This is what drove the decision to make use of an additional parity bit and create the Hamming (8,4).

Conclusion

We’ve seen how the error correction for Hamming codes look like and went through the extensive off-by-one-error workout.

Code snippets can be found on GitHub.

You May Also Like

Grails session timeout without XML

This article shows clean, non hacky way of configuring featureful event listeners for Grails application servlet context. Feat. HttpSessionListener as a Spring bean example with session timeout depending on whether user account is premium or not.

Common approaches

Speaking of session timeout config in Grails, a default approach is to install templates with a command. This way we got direct access to web.xml file. Also more unnecessary files are created. Despite that unnecessary files are unnecessary, we should also remember some other common knowledge: XML is not for humans.

Another, a bit more hacky, way is to create mysterious scripts/_Events.groovy file. Inside of which, by using not less enigmatic closure: eventWebXmlEnd = { filename -> ... }, we can parse and hack into web.xml with a help of XmlSlurper.
Even though lot of Grails plugins do it similar way, still it’s not really straightforward, is it? Besides, where’s the IDE support? Hello!?

Examples of both above ways can be seen on StackOverflow.

Simpler and cleaner way

By adding just a single line to the already generated init closure we have it done:
class BootStrap {

def init = { servletContext ->
servletContext.addListener(OurListenerClass)
}
}

Allrighty, this is enough to avoid XML. Sweets are served after the main course though :)

Listener as a Spring bean

Let us assume we have a requirement. Set a longer session timeout for premium user account.
Users are authenticated upon session creation through SSO.

To easy meet the requirements just instantiate the CustomTimeoutSessionListener as Spring bean at resources.groovy. We also going to need some source of the user custom session timeout. Let say a ConfigService.
beans = {    
customTimeoutSessionListener(CustomTimeoutSessionListener) {
configService = ref('configService')
}
}

With such approach BootStrap.groovy has to by slightly modified. To keep control on listener instantation, instead of passing listener class type, Spring bean is injected by Grails and the instance passed:
class BootStrap {

def customTimeoutSessionListener

def init = { servletContext ->
servletContext.addListener(customTimeoutSessionListener)
}
}

An example CustomTimeoutSessionListener implementation can look like:
import javax.servlet.http.HttpSessionEvent    
import javax.servlet.http.HttpSessionListener
import your.app.ConfigService

class CustomTimeoutSessionListener implements HttpSessionListener {

ConfigService configService

@Override
void sessionCreated(HttpSessionEvent httpSessionEvent) {
httpSessionEvent.session.maxInactiveInterval = configService.sessionTimeoutSeconds
}

@Override
void sessionDestroyed(HttpSessionEvent httpSessionEvent) { /* nothing to implement */ }
}
Having at hand all power of the Spring IoC this is surely a good place to load some persisted user’s account stuff into the session or to notify any other adequate bean about user presence.

Wait, what about the user context?

Honest answer is: that depends on your case. Yet here’s an example of getSessionTimeoutMinutes() implementation using Spring Security:
import org.springframework.security.core.context.SecurityContextHolder    

class ConfigService {

static final int 3H = 3 * 60 * 60
static final int QUARTER = 15 * 60

int getSessionTimeoutSeconds() {

String username = SecurityContextHolder.context?.authentication?.principal
def account = Account.findByUsername(username)

return account?.premium ? 3H : QUARTER
}
}
This example is simplified. Does not contain much of defensive programming. Just an assumption that principal is already set and is a String - unique username. Thanks to Grails convention our ConfigService is transactional so the Account domain class can use GORM dynamic finder.
OK, config fetching implementation details are out of scope here anyway. You can get, load, fetch, obtain from wherever you like to. Domain persistence, principal object, role config, external file and so on...

Any gotchas?

There is one. When running grails test command, servletContext comes as some mocked class instance without addListener method. Thus we going to have a MissingMethodException when running tests :(

Solution is typical:
def init = { servletContext ->
if (Environment.current != Environment.TEST) {
servletContext.addListener(customTimeoutSessionListener)
}
}
An unnecessary obstacle if you ask me. Should I submit a Jira issue about that?

TL;DR

Just implement a HttpSessionListener. Create a Spring bean of the listener. Inject it into BootStrap.groovy and call servletContext.addListener(injectedListener).

GWT Hosted mode on 64bit linux

GWT for linux is build against 32bit architecture. It contains some SWT/GTK 32bit modules. So if you try to run it with 64bit java it failsException in thread "main" java.lang.UnsatisfiedLinkError: /opt/tools/sdk/gwt/gwt-linux-1.5.3/libswt-pi-gtk-3235....

How to use mocks in controller tests

Even since I started to write tests for my Grails application I couldn't find many articles on using mocks. Everyone is talking about tests and TDD but if you search for it there isn't many articles.

Today I want to share with you a test with mocks for a simple and complete scenario. I have a simple application that can fetch Twitter tweets and present it to user. I use REST service and I use GET to fetch tweets by id like this: http://api.twitter.com/1/statuses/show/236024636775735296.json. You can copy and paste it into your browser to see a result.

My application uses Grails 2.1 with spock-0.6 for tests. I have TwitterReaderService that fetches tweets by id, then I parse a response into my Tweet class.


class TwitterReaderService {
Tweet readTweet(String id) throws TwitterError {
try {
String jsonBody = callTwitter(id)
Tweet parsedTweet = parseBody(jsonBody)
return parsedTweet
} catch (Throwable t) {
throw new TwitterError(t)
}
}

private String callTwitter(String id) {
// TODO: implementation
}

private Tweet parseBody(String jsonBody) {
// TODO: implementation
}
}

class Tweet {
String id
String userId
String username
String text
Date createdAt
}

class TwitterError extends RuntimeException {}

TwitterController plays main part here. Users call show action along with id of a tweet. This action is my subject under test. I've implemented some basic functionality. It's easier to focus on it while writing tests.


class TwitterController {
def twitterReaderService

def index() {
}

def show() {
Tweet tweet = twitterReaderService.readTweet(params.id)
if (tweet == null) {
flash.message = 'Tweet not found'
redirect(action: 'index')
return
}

[tweet: tweet]
}
}

Let's start writing a test from scratch. Most important thing here is that I use mock for my TwitterReaderService. I do not construct new TwitterReaderService(), because in this test I test only TwitterController. I am not interested in injected service. I know how this service is supposed to work and I am not interested in internals. So before every test I inject a twitterReaderServiceMock into controller:


import grails.test.mixin.TestFor
import spock.lang.Specification

@TestFor(TwitterController)
class TwitterControllerSpec extends Specification {
TwitterReaderService twitterReaderServiceMock = Mock(TwitterReaderService)

def setup() {
controller.twitterReaderService = twitterReaderServiceMock
}
}

Now it's time to think what scenarios I need to test. This line from TwitterReaderService is the most important:


Tweet readTweet(String id) throws TwitterError

You must think of this method like a black box right now. You know nothing of internals from controller's point of view. You're only interested what can be returned for you:

  • a TwitterError can be thrown
  • null can be returned
  • Tweet instance can be returned

This list is your test blueprint. Now answer a simple question for each element: "What do I want my controller to do in this situation?" and you have plan test:

  • show action should redirect to index if TwitterError is thrown and inform about error
  • show action should redirect to index and inform if tweet is not found
  • show action should show found tweet

That was easy and straightforward! And now is the best part: we use twitterReaderServiceMock to mock each of these three scenarios!

In Spock there is a good documentation about interaction with mocks. You declare what methods are called, how many times, what parameters are given and what should be returned. Remember a black box? Mock is your black box with detailed instruction, e.g.: I expect you that if receive exactly one call to readTweet with parameter '1' then you should throw me a TwitterError. Rephrase this sentence out loud and look at this:


1 * twitterReaderServiceMock.readTweet('1') >> { throw new TwitterError() }

This is a valid interaction definition on mock! It's that easy! Here is a complete test that fails for now:


import grails.test.mixin.TestFor
import spock.lang.Specification

@TestFor(TwitterController)
class TwitterControllerSpec extends Specification {
TwitterReaderService twitterReaderServiceMock = Mock(TwitterReaderService)

def setup() {
controller.twitterReaderService = twitterReaderServiceMock
}

def "show should redirect to index if TwitterError is thrown"() {
given:
controller.params.id = '1'
when:
controller.show()
then:
1 * twitterReaderServiceMock.readTweet('1') >> { throw new TwitterError() }
0 * _._
flash.message == 'There was an error on fetching your tweet'
response.redirectUrl == '/twitter/index'
}
}

| Failure: show should redirect to index if TwitterError is thrown(pl.refaktor.twitter.TwitterControllerSpec)
| pl.refaktor.twitter.TwitterError
at pl.refaktor.twitter.TwitterControllerSpec.show should redirect to index if TwitterError is thrown_closure1(TwitterControllerSpec.groovy:29)

You may notice 0 * _._ notation. It says: I don't want any other mocks or any other methods called. Fail this test if something is called! It's a good practice to ensure that there are no more interactions than you want.

Ok, now I need to implement controller logic to handle TwitterError.


class TwitterController {

def twitterReaderService

def index() {
}

def show() {
Tweet tweet

try {
tweet = twitterReaderService.readTweet(params.id)
} catch (TwitterError e) {
log.error(e)
flash.message = 'There was an error on fetching your tweet'
redirect(action: 'index')
return
}

[tweet: tweet]
}
}

My tests passes! We have two scenarios left. Rule stays the same: TwitterReaderService returns something and we test against it. So this line is the heart of each test, change only returned values after >>:


1 * twitterReaderServiceMock.readTweet('1') >> { throw new TwitterError() }

Here is a complete test for three scenarios and controller that passes it.


import grails.test.mixin.TestFor
import spock.lang.Specification

@TestFor(TwitterController)
class TwitterControllerSpec extends Specification {

TwitterReaderService twitterReaderServiceMock = Mock(TwitterReaderService)

def setup() {
controller.twitterReaderService = twitterReaderServiceMock
}

def "show should redirect to index if TwitterError is thrown"() {
given:
controller.params.id = '1'
when:
controller.show()
then:
1 * twitterReaderServiceMock.readTweet('1') >> { throw new TwitterError() }
0 * _._
flash.message == 'There was an error on fetching your tweet'
response.redirectUrl == '/twitter/index'
}

def "show should inform about not found tweet"() {
given:
controller.params.id = '1'
when:
controller.show()
then:
1 * twitterReaderServiceMock.readTweet('1') >> null
0 * _._
flash.message == 'Tweet not found'
response.redirectUrl == '/twitter/index'
}


def "show should show found tweet"() {
given:
controller.params.id = '1'
when:
controller.show()
then:
1 * twitterReaderServiceMock.readTweet('1') >> new Tweet()
0 * _._
flash.message == null
response.status == 200
}
}

class TwitterController {

def twitterReaderService

def index() {
}

def show() {
Tweet tweet

try {
tweet = twitterReaderService.readTweet(params.id)
} catch (TwitterError e) {
log.error(e)
flash.message = 'There was an error on fetching your tweet'
redirect(action: 'index')
return
}

if (tweet == null) {
flash.message = 'Tweet not found'
redirect(action: 'index')
return
}

[tweet: tweet]
}
}

The most important thing here is that we've tested controller-service interaction without logic implementation in service! That's why mock technique is so useful. It decouples your dependencies and let you focus on exactly one subject under test. Happy testing!